Generalized selection to overcome innate immunity selects for host breadth in an RNA virus. Wasik B.R., Muñoz-Rojas A.R., Okamoto K.W., Miller-Jensen K., Turner PE. Evolution 70 (2), 2016. View on Pubmed or the Evolution website.

Redefining Signaling Pathways with an Expanding Single-Cell Toolbox.. Gaudet S., Miller-Jensen K. Trends Biotechnol. 34 (6), 2016. View on Pubmed or the Trends Biotechnol. website.

Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands. Lu Y., Xue Q., Eisele M.R., Sulistijo E.S., Brower K., Han L, Amir el-A.D., Pe'er D., Miller-Jensen K., Fan R. Proc Natl Acad Sci 112 (7) E607-15, 2015. View on Pubmed or the Proc Natl Acad Sci website.

Analysis of single-cell cytokine secretion reveals a role for paracrine signaling in coordinating macrophage responses to TLR4 stimulation. Xue Q., Lu Y., Eisele M.R., Sulistijo E.S., Khan N, Fan R, Miller-Jensen K. Science Signaling 8 (381), 2015. View on Pubmed or the Science Signaling website.

A passive-flow microfluidic device for imaging latent HIV activation dynamics in single T cells. Ramji R., Wong V.C., Chavali A.K., Gearhart L.M., Miller-Jensen K. Integrative Biology 7 (9) 998-1010, 2015. View on Pubmed or the Integrative Biology website.

"Pop-slide" patterning: rapid fabrication of microstructured PDMS gasket slides for biological applications. Ramji R., Khan N.T., Muñoz Rojas A., Miller-Jensen K. RSC Advances 5, 2015. View on Pubmed or the RSC Advances website.

Distinct promoter activation mechanisms modulate noise-driven HIV gene expression. Chavali A.K., Wong V.C., Miller-Jensen K. Scientific Reports 5 (17661), 2015. View on Pubmed or the Scientific Reports website.

Quantitative Evaluation and Optimization of Co-drugging to Improve Anti-HIV Latency Therapy. Wong V.C., Fong L.E., Adams N.M., Xue Q., Dey S.S., Miller-Jensen K. Cellular and Molecular Bioengineering 7 (3) 320-333, 2014. View on Pubmed or the Cellular and Molecular Bioengineering website.

Genetic selection for context-dependent stochastic phenotypes: Sp1 and TATA mutations increase phenotypic noise in HIV-1 gene expression. Miller-Jensen K., Skupsky R., Shah P.S., Arkin A.P., Schaffer D.V. PLoS Computational Biology 9 (7), 2013. View on Pubmed or the PLoS Computational Biology website.

High-throughput secretomic analysis of single cells to assess functional cellular heterogeneity. Lu Y., Chen JJ, Mu L, Xue Q., Wu Y., Wu P.H., Li J., Vortmeyer A.O., Miller-Jensen K., Wirtz D, Fan R. Anal Chem 85 (4) 2548-56, 2013. View on Pubmed or the Anal Chem website.

Systems biology of virus-host signaling network interactions. Xue Q., Miller-Jensen K. BMB Reports 45 (4), 2012. View on Pubmed or the BMB Reports website.

Chromatin accessibility at the HIV LTR promoter sets a threshold for NF-κB mediated viral gene expression. Miller-Jensen K., Dey S.S., Pham N., Foley J.E., Arkin A.P., Schaffer D.V. Integrative Biology 4 (6), 2012. View on Pubmed or the Integrative Biology website.

Varying virulence: epigenetic control of expression noise and disease processes. Miller-Jensen K., Dey S.S., Schaffer D.V., Arkin A.P. Trends in Biotechnology 29 (10), 2011. View on Pubmed or the Trends in Biotechnology website.

Control of stochastic gene expression by host factors at the HIV promoter. Burnett, J.C., Miller-Jensen, K., Shah, P.S.,Arkin, A.P., Schaffer, D.V. PLoS Pathogens 5 (1), 2009. View on Pubmed or the PLoS Pathogens website.

Common effector processing mediates cell-specific responses to stimuli. Miller-Jensen, K.*, Janes, K.A.*, Brugge, J. S., Lauffenburger, D.A. Nature 448 (7153) 604-8, 2007. (Research highlight in Nature Biotechnology, 9/07) View on Pubmed or the Nature website.

Adenoviral vector saturates Akt pro-survival signaling and blocks insulin-mediated rescue of tumor necrosis-factor-induced apoptosis. Miller-Jensen, K., Janes, K.A., Wong, Y., Griffith, L.G., Lauffenburger, D.A. J Cell Science 119 (18) 3788-98, 2007. View on Pubmed or the J Cell Science website.